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59 ta ish

Ish: Chromosome-level genome assembly of Albizia odoratissima and effect of flavonoid metabolic pathways under drought stress

  1. Full-length transcriptome assembly from RNA-Seq data without a reference genome

    Manfred Grabherr, Brian J. Haas, Moran Yassour +18

    MaqolaOchiq kirish201116 iqtibos
    ABI

  2. PAML 4: Phylogenetic Analysis by Maximum Likelihood

    Z. Yang

    MaqolaOchiq kirish200711 iqtibos
    ABI

  3. StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

    Mihaela Pertea, Geo Pertea, Corina Antonescu +3

    MaqolaOchiq kirish20158 iqtibos
    ABI

  4. Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

    Brian J. Haas, Steven L. Salzberg, Wei Zhu +6

    MaqolaOchiq kirish20087 iqtibos
    ABI

  5. tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence

    Todd M. Lowe, Sean R. Eddy

    MaqolaOchiq kirish19977 iqtibos
    ABI

  6. Proline: a multifunctional amino acid

    László Szabados, Arnould Savouré

    Sharh maqola20097 iqtibos
    ABI

  7. Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm

    Haoyu Cheng, Gregory T. Concepcion, Xiaowen Feng +2

    MaqolaOchiq kirish20217 iqtibos
    ABI

  8. HISAT: a fast spliced aligner with low memory requirements

    Daehwan Kim, Ben Langmead, Steven L. Salzberg

    Maqola20157 iqtibos
    ABI

  9. Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

    Brian Haas

    MaqolaOchiq kirish20036 iqtibos
    ABI

  10. Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper

    Jaime Huerta‐Cepas, Kristoffer Forslund, Luís Pedro Coelho +4

    MaqolaOchiq kirish20175 iqtibos
    ABI

  11. PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools

    Huaiyu Mi, Anushya Muruganujan, Dustin Ebert +2

    Maqola20185 iqtibos
    ABI

  12. HiC-Pro: an optimized and flexible pipeline for Hi-C data processing

    Nicolas Servant, Nelle Varoquaux, Bryan R. Lajoie +6

    MaqolaOchiq kirish20154 iqtibos
    ABI

  13. LTR_retriever: A Highly Accurate and Sensitive Program for Identification of Long Terminal Repeat Retrotransposons

    Shujun Ou, Ning Jiang

    MaqolaOchiq kirish20174 iqtibos
    ABI

  14. WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes

    Pengchuan Sun, Beibei Jiao, Yongzhi Yang +6

    Maqola20224 iqtibos
    ABI

  15. Gene finding in novel genomes

    Ian Korf

    MaqolaOchiq kirish20043 iqtibos
    ABI

  16. LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons

    Zhigang Xu, Hao Wang

    MaqolaOchiq kirish20073 iqtibos
    ABI

  17. The Pfam protein families database in 2019

    Sara El-Gebali, Jaina Mistry, Alex Bateman +13

    MaqolaOchiq kirish20183 iqtibos
    ABI

  18. Using native and syntenically mapped cDNA alignments to improve <i>de novo</i> gene finding

    Mario Stanke, Mark Diekhans, Robert Baertsch +1

    MaqolaOchiq kirish20083 iqtibos
    ABI

  19. Infernal 1.1: 100-fold faster RNA homology searches

    Eric P. Nawrocki, Sean R. Eddy

    MaqolaOchiq kirish20133 iqtibos
    ABI

  20. OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy

    David Emms, Steven Kelly

    Maqola20153 iqtibos
    ABI

  21. The SWISS-PROT protein knowledgebase and its supplement TrEMBL in 2003

    Brigitte Boeckmann

    Maqola20033 iqtibos
    ABI

  22. Impact of drought on growth, photosynthesis, osmotic adjustment, and cell wall elasticity in Damask rose

    Hatim M. Al-Yasi, Houneïda Attia, Khalid Alamer +5

    Maqola20203 iqtibos
    ABI

  23. Chromosome-scale scaffolding of de novo genome assemblies based on chromatin interactions

    Joshua N. Burton, Andrew Adey, Rupali P Patwardhan +3

    MaqolaOchiq kirish20132 iqtibos
    ABI

  24. KEGG as a reference resource for gene and protein annotation

    Minoru Kanehisa, Yoko Sato, Masayuki Kawashima +2

    MaqolaOchiq kirish20152 iqtibos
    ABI

  25. Flavonoid-attracted <i>Aeromonas</i> sp. from the Arabidopsis root microbiome enhances plant dehydration resistance

    Danxia He, Sunil Kumar Singh, Peng Li +8

    Maqola20222 iqtibos
    ABI