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Ish: Antibiotic growth promoter and phytogenic feed additive consistently alter microbial community structure in chicken cecum
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel
MaqolaOchiq kirish201430 iqtibosABIThe Sequence Alignment/Map format and SAMtools
Heng Li, Bob Handsaker, Alec Wysoker +7
MaqolaOchiq kirish200925 iqtibosABIFast gapped-read alignment with Bowtie 2
Ben Langmead, Steven L. Salzberg
MaqolaOchiq kirish201214 iqtibosABIImproved metagenomic analysis with Kraken 2
Derrick E. Wood, Jennifer Lu, Ben Langmead
MaqolaOchiq kirish20198 iqtibosABIBracken: estimating species abundance in metagenomics data
Jennifer Lu, Florian P. Breitwieser, Peter Thielen +1
MaqolaOchiq kirish20173 iqtibosABI