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Ish: Translocation-induced enhancer rewiring reveals cryptic oncogenic circuits in multiple myeloma
Trimmomatic: a flexible trimmer for Illumina sequence data
Anthony Bolger, Marc Lohse, Björn Usadel
MaqolaOchiq kirish201430 iqtibosABIFast and accurate short read alignment with Burrows–Wheeler transform
MaqolaOchiq kirish200929 iqtibosABIfastp: an ultra-fast all-in-one FASTQ preprocessor
Shifu Chen, Yanqing Zhou, Yaru Chen +1
MaqolaOchiq kirish201828 iqtibosABIFast gapped-read alignment with Bowtie 2
Ben Langmead, Steven L. Salzberg
MaqolaOchiq kirish201214 iqtibosABIGraph-based genome alignment and genotyping with HISAT2 and HISAT-genotype
Daehwan Kim, Joseph M. Paggi, Chanhee Park +2
MaqolaOchiq kirish20199 iqtibosABIStringTie enables improved reconstruction of a transcriptome from RNA-seq reads
Mihaela Pertea, Geo Pertea, Corina Antonescu +3
MaqolaOchiq kirish20158 iqtibosABIBEDTools: a flexible suite of utilities for comparing genomic features
MaqolaOchiq kirish20106 iqtibosABIHiC-Pro: an optimized and flexible pipeline for Hi-C data processing
Nicolas Servant, Nelle Varoquaux, Bryan R. Lajoie +6
MaqolaOchiq kirish20154 iqtibosABI