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Ish: Whole-Genome Sequencing Identifies a New Aspergillus tubingensis Strain from Eremostachys isochila with Intraspecific Variation in Pharmaceutically Relevant Biosynthetic Gene Clusters

  1. MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

    Kazutaka Katoh, Daron M. Standley

    MaqolaOchiq kirish201397 iqtibos
    ABI

  2. IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

    Bùi Quang Minh, Heiko A. Schmidt, Olga Chernomor +4

    MaqolaOchiq kirish202029 iqtibos
    ABI

  3. fastp: an ultra-fast all-in-one FASTQ preprocessor

    Shifu Chen, Yanqing Zhou, Yaru Chen +1

    MaqolaOchiq kirish201828 iqtibos
    ABI

  4. SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing

    Anton Bankevich, Sergey Nurk, Dmitry Antipov +13

    MaqolaOchiq kirish201223 iqtibos
    ABI

  5. KEGG: Kyoto Encyclopedia of Genes and Genomes

    Minoru Kanehisa

    MaqolaOchiq kirish200013 iqtibos
    ABI

  6. BLAST+: architecture and applications

    Christiam Camacho, George Coulouris, Vahram Avagyan +4

    MaqolaOchiq kirish20099 iqtibos
    ABI

  7. Classification of Aspergillus, Penicillium, Talaromyces and related genera (Eurotiales): An overview of families, genera, subgenera, sections, series and species

    Jos Houbraken, Sándor Kocsubé́, Cobus M. Visagie +8

    MaqolaOchiq kirish20207 iqtibos
    ABI

  8. Phylogenetic relationships among ascomycetes: evidence from an RNA polymerse II subunit

    Y J Liu, Sally Whelen, B. D. Hall

    MaqolaOchiq kirish19996 iqtibos
    ABI

  9. Trichoderma species — opportunistic, avirulent plant symbionts

    Gary E. Harman, Charles R. Howell, Ada Viterbo +2

    Sharh maqola20046 iqtibos
    ABI

  10. OrthoFinder: phylogenetic orthology inference for comparative genomics

    David Emms, Steven Kelly

    MaqolaOchiq kirish20196 iqtibos
    ABI

  11. Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes

    N. Louise Glass, Gavin C. Donaldson

    MaqolaOchiq kirish19955 iqtibos
    ABI

  12. dbCAN3: automated carbohydrate-active enzyme and substrate annotation

    Jinfang Zheng, Qiwei Ge, Yuchen Yan +3

    MaqolaOchiq kirish20235 iqtibos
    ABI

  13. SignalP 6.0 predicts all five types of signal peptides using protein language models

    Felix Teufel, José Juan Almagro Armenteros, Alexander Rosenberg Johansen +7

    Maqola20225 iqtibos
    ABI

  14. Using SPAdes De Novo Assembler

    Andrey D. Prjibelski, Dmitry Antipov, Dmitry Meleshko +2

    Maqola20205 iqtibos
    ABI

  15. QUAST: quality assessment tool for genome assemblies

    Alexey Gurevich, Vladislav Saveliev, Nikolay Vyahhi +1

    Maqola20135 iqtibos
    ABI

  16. Phylogeny, identification and nomenclature of the genus<i>Aspergillus</i>

    Robert A. Samson, Cobus M. Visagie, Jos Houbraken +12

    MaqolaOchiq kirish20144 iqtibos
    ABI

  17. FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

    Morgan N. Price, Paramvir Dehal, Adam P. Arkin

    MaqolaOchiq kirish20104 iqtibos
    ABI

  18. Sensitive protein alignments at tree-of-life scale using DIAMOND

    Benjamin Buchfink, Klaus Reuter, Hajk‐Georg Drost

    MaqolaOchiq kirish20214 iqtibos
    ABI

  19. eggNOG-mapper v2: Functional Annotation, Orthology Assignments, and Domain Prediction at the Metagenomic Scale

    Carlos P. Cantalapiedra, Ana Hernández-Plaza, Ivica Letunić +2

    BoshqaOchiq kirish20214 iqtibos
    ABI

  20. DrugBank 5.0: a major update to the DrugBank database for 2018

    David S. Wishart, Yannick Djoumbou-Feunang, An Chi Guo +19

    MaqolaOchiq kirish20174 iqtibos
    ABI

  21. antiSMASH 8.0: extended gene cluster detection capabilities and analyses of chemistry, enzymology, and regulation

    Kai Blin, Simon J. Shaw, Lisa Vader +24

    Maqola20254 iqtibos
    ABI

  22. Genomic and Metabolomic Analysis of the Endophytic Fungus Alternaria alstroemeriae S6 Isolated from Veronica acinifolia: Identification of Anti-Bacterial Properties and Production of Succinic Acid

    Farkhod Eshboev, Alex Xiong Gao, Akhror Abdurashidov +10

    MaqolaOchiq kirishMicrobial Natural Products and BiosynthesisAntibiotics20253 iqtibos
    ABI

  23. Sarlavhasiz

    BoshqaOchiq kirish3 iqtibos
    ABI

  24. The carbohydrate-active enzyme database: functions and literature

    Élodie Drula, Marie-Line Garron, Suzan Doğan +3

    MaqolaOchiq kirish20213 iqtibos
    ABI

  25. AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints

    Mario Stanke, Burkhard Morgenstern

    Maqola20053 iqtibos
    ABI