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69 ta ish

Ish: In silico study of the impact of oxidation on pyruvate transmission across the hVDAC1 protein channel

  1. VMD: Visual molecular dynamics

    William Humphrey, Andrew Dalke, Klaus Schulten

    Maqola199677 iqtibos
    ABI

  2. GROMACS: High performance molecular simulations through multi-level parallelism from laptops to supercomputers

    M Abraham, Teemu J. Murtola, Roland Schulz +4

    Maqola201530 iqtibos
    ABI

  3. Polymorphic transitions in single crystals: A new molecular dynamics method

    Michele Parrinello, A. Rahman

    Maqola198127 iqtibos
    ABI

  4. GROMACS: Fast, flexible, and free

    David van der Spoel, Erik Lindahl, Berk Hess +3

    Maqola200513 iqtibos
    ABI

  5. A smooth particle mesh Ewald method

    Ulrich Essmann, L. Perera, Max L. Berkowitz +3

    Maqola199512 iqtibos
    ABI

  6. Chemical modification of amino acids by atmospheric-pressure cold plasma in aqueous solution

    Eisuke Takai, Tsuyoshi Kitamura, Junpei Kuwabara +6

    Maqola201412 iqtibos
    ABI

  7. Non‐Thermal Plasma as a Unique Delivery System of Short‐Lived Reactive Oxygen and Nitrogen Species for Immunogenic Cell Death in Melanoma Cells

    Abraham Lin, Yury Gorbanev, Joey De Backer +7

    Maqola201911 iqtibos
    ABI

  8. The Nose–Hoover thermostat

    D.J. Evans, Brad Lee Holian

    Maqola198511 iqtibos
    ABI

  9. THE weighted histogram analysis method for free‐energy calculations on biomolecules. I. The method

    Shankar Kumar, John M. Rosenberg, Djamal Bouzida +2

    Maqola199210 iqtibos
    ABI

  10. Impact of plasma oxidation on structural features of human epidermal growth factor

    Maksudbek Yusupov, Jan‐Wilm Lackmann, Jamoliddin Razzokov +3

    Maqola20189 iqtibos
    ABI

  11. Umbrella sampling

    Johannes Kästner

    Maqola20118 iqtibos
    ABI

  12. CHARMM36m: an improved force field for folded and intrinsically disordered proteins

    Jing Huang, Sarah Rauscher, Grzegorz Nawrocki +5

    Maqola20168 iqtibos
    ABI

  13. Molecular Biology of the Cell

    Bruce Alberts, Alexander D. Johnson, Julian Lewis +4

    Kitob20178 iqtibos
    ABI

  14. Atomic scale understanding of the permeation of plasma species across native and oxidized membranes

    Jamoliddin Razzokov, Maksudbek Yusupov, Rodrigo M. Cordeiro +1

    Maqola20187 iqtibos
    ABI

  15. Interaction of Atmospheric-Pressure Air Microplasmas with Amino Acids as Fundamental Processes in Aqueous Solution

    Renwu Zhou, Rusen Zhou, Jinxing Zhuang +5

    Maqola20167 iqtibos
    ABI

  16. Low-Temperature Plasma for Biology, Hygiene, and Medicine: Perspective and Roadmap

    Mounir Laroussi, Sander Bekeschus, Michael Keidar +17

    MaqolaPlasma Applications and DiagnosticsIEEE Transactions on Radiation and Plasma Medical Sciences20216 iqtibos
    ABI

  17. Hydroxyl Radical-Mediated Modification of Proteins as Probes for Structural Proteomics

    Guozhong Xu, Mark R. Chance

    Sharh maqola20076 iqtibos
    ABI

  18. CHARMM‐GUI: A web‐based graphical user interface for CHARMM

    Sunhwan Jo, Taehoon Kim, Vidyashankara Iyer +1

    Maqola20086 iqtibos
    ABI

  19. Effect of oxidative stress on cystine transportation by xC‾ antiporter

    Maryam Ghasemitarei, Maksudbek Yusupov, Jamoliddin Razzokov +2

    Maqola20195 iqtibos
    ABI

  20. Implementation of the CHARMM Force Field in GROMACS: Analysis of Protein Stability Effects from Correction Maps, Virtual Interaction Sites, and Water Models

    Pär Bjelkmar, Per Larsson, Michel A. Cuendet +2

    Maqola20104 iqtibos
    ABI

  21. CHARMM general force field: A force field for drug‐like molecules compatible with the CHARMM all‐atom additive biological force fields

    Kenno Vanommeslaeghe, Elizabeth Hatcher, Chitrangada Acharya +8

    Maqola20094 iqtibos
    ABI

  22. Production of intracellular reactive oxygen species and change of cell viability induced by atmospheric pressure plasma in normal and cancer cells

    Sun Ja Kim, Hea Min Joh, T. H. Chung

    Maqola20133 iqtibos
    ABI

  23. The Influence of Cell Type and Culture Medium on Determining Cancer Selectivity of Cold Atmospheric Plasma Treatment

    Eline Biscop, Abraham Lin, Wilma Van Boxem +6

    Maqola20193 iqtibos
    ABI

  24. Bioactive Nonthermal Biocompatible Plasma Enhances Migration on Human Gingival Fibroblasts

    Ihn Han, In‐Seok Song, Seung Ah Choi +6

    Maqola20223 iqtibos
    ABI

  25. HOLE: A program for the analysis of the pore dimensions of ion channel structural models

    Oliver S. Smart, Joseph G. Neduvelil, Xiaonan Wang +2

    Maqola19963 iqtibos
    ABI