Работы, на которые ссылается эта работа

Работ: 47

Работа: Haplotype-resolved chromosome-level genome assembly of an autohexaploid oil camellia tree Camellia osmantha

fastp: an ultra-fast all-in-one FASTQ preprocessor
Shifu Chen, Yanqing Zhou, Yaru Chen +1
Статья2018Цитирований: 18
ABI
Full-length transcriptome assembly from RNA-Seq data without a reference genome
Manfred Grabherr, Brian J. Haas, Moran Yassour +18
Статья2011Цитирований: 14
ABI
Fast and sensitive protein alignment using DIAMOND
Benjamin Buchfink, Chao Xie, Daniel H. Huson
Статья2014Цитирований: 12
ABI
Fast gapped-read alignment with Bowtie 2
Ben Langmead, Steven L. Salzberg
Статья2012Цитирований: 11
ABI
KEGG: Kyoto Encyclopedia of Genes and Genomes
Minoru Kanehisa
Статья2000Цитирований: 10
ABI
Tandem repeats finder: a program to analyze DNA sequences
Gary Benson
Статья1999Цитирований: 10
ABI
tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence
Todd M. Lowe, Sean R. Eddy
Статья1997Цитирований: 7
ABI
Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm
Haoyu Cheng, Gregory T. Concepcion, Xiaowen Feng +2
Статья2021Цитирований: 7
ABI
HISAT: a fast spliced aligner with low memory requirements
Daehwan Kim, Ben Langmead, Steven L. Salzberg
Статья2015Цитирований: 7
ABI
A fast, lock-free approach for efficient parallel counting of occurrences of <i>k</i> -mers
Guillaume Marçais, Carl Kingsford
Статья2011Цитирований: 6
ABI
Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies
Brian Haas
Статья2003Цитирований: 6
ABI
InterProScan 5: genome-scale protein function classification
Philip Jones, David Binns, Hsin-Yu Chang +14
Статья2014Цитирований: 5
ABI
GenomeScope 2.0 and Smudgeplot for reference-free profiling of polyploid genomes
T. Rhyker Ranallo-Benavidez, Kamil S. Jaroň, Michael C. Schatz
Статья2020Цитирований: 4
ABI
De novo assembly of the <i>Aedes aegypti</i> genome using Hi-C yields chromosome-length scaffolds
Olga Dudchenko, Sanjit Singh Batra, Arina D. Omer +8
Статья2017Цитирований: 4
ABI
KaKs_Calculator 3.0: Calculating Selective Pressure on Coding and Non-Coding Sequences
Zhang Zhang
Статья2022Цитирований: 4
ABI
LTR_FINDER: an efficient tool for the prediction of full-length LTR retrotransposons
Zhigang Xu, Hao Wang
Статья2007Цитирований: 3
ABI
Infernal 1.1: 100-fold faster RNA homology searches
Eric P. Nawrocki, Sean R. Eddy
Статья2013Цитирований: 3
ABI
HiC-Pro: an optimized and flexible pipeline for Hi-C data processing
Nicolas Servant, Nelle Varoquaux, Bryan R. Lajoie +6
Статья2015Цитирований: 3
ABI
RepeatModeler2 for automated genomic discovery of transposable element families
Jullien M. Flynn, Robert Hubley, Clément Goubert +4
Статья2020Цитирований: 3
ABI
Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments
Neva C. Durand, Muhammad S. Shamim, Ido Machol +4
Статья2016Цитирований: 3
ABI
The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
Nathalie Choisne, Béatrice Segurens, Patrick Wincker +61
Статья2007Цитирований: 3
ABI
Camellia as an Oilseed Crop
Haiying Liang, Bing-Qing Hao, Guo-Chen Chen +2
Статья2017Цитирований: 3
ABI
The complex hexaploid oil‐Camellia genome traces back its phylogenomic history and multi‐omics analysis of Camellia oil biosynthesis
Huaguo Zhu, Fuqiu Wang, Zhongping Xu +20
Статья2024Цитирований: 3
ABI
The tetraploid Camellia oleifera genome provides insights into evolution, agronomic traits, and genetic architecture of oil Camellia plants
Lin Zhang, Shi Yan, Wenfang Gong +15
Статья2024Цитирований: 3
ABI
Using RepeatMasker to Identify Repetitive Elements in Genomic Sequences
Maja Tarailo‐Graovac, Nansheng Chen
Статья2009Цитирований: 3
ABI