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96 ta ish

Ish: The genomic and bulked segregant analysis of Curcuma alismatifolia revealed its diverse bract pigmentation

  1. MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

    Kazutaka Katoh, Daron M. Standley

    MaqolaOchiq kirish201397 iqtibos
    ABI

  2. RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

    Alexandros Stamatakis

    MaqolaOchiq kirish201491 iqtibos
    ABI

  3. Fast and accurate short read alignment with Burrows–Wheeler transform

    Heng Li, Richard Durbin

    MaqolaOchiq kirish200929 iqtibos
    ABI

  4. fastp: an ultra-fast all-in-one FASTQ preprocessor

    Shifu Chen, Yanqing Zhou, Yaru Chen +1

    MaqolaOchiq kirish201828 iqtibos
    ABI

  5. Full-length transcriptome assembly from RNA-Seq data without a reference genome

    Manfred Grabherr, Brian J. Haas, Moran Yassour +18

    MaqolaOchiq kirish201116 iqtibos
    ABI

  6. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

    Michael I. Love, Wolfgang Huber, Simon Anders

    MaqolaOchiq kirish201414 iqtibos
    ABI

  7. Fast gapped-read alignment with Bowtie 2

    Ben Langmead, Steven L. Salzberg

    MaqolaOchiq kirish201214 iqtibos
    ABI

  8. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

    Felipe A. Simão, Robert M. Waterhouse, Panagiotis Ioannidis +2

    MaqolaOchiq kirish201512 iqtibos
    ABI

  9. PAML 4: Phylogenetic Analysis by Maximum Likelihood

    Z. Yang

    MaqolaOchiq kirish200711 iqtibos
    ABI

  10. WGCNA: an R package for weighted correlation network analysis

    Peter Langfelder, Steve Horvath

    MaqolaOchiq kirish200810 iqtibos
    ABI

  11. Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

    Daehwan Kim, Joseph M. Paggi, Chanhee Park +2

    MaqolaOchiq kirish20199 iqtibos
    ABI

  12. Fast and accurate long-read alignment with Burrows–Wheeler transform

    Heng Li, Richard Durbin

    MaqolaOchiq kirish20108 iqtibos
    ABI

  13. Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown

    Mihaela Pertea, Daehwan Kim, Geo Pertea +2

    MaqolaOchiq kirish20168 iqtibos
    ABI

  14. Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

    Brian J. Haas, Steven L. Salzberg, Wei Zhu +6

    MaqolaOchiq kirish20087 iqtibos
    ABI

  15. A fast, lock-free approach for efficient parallel counting of occurrences of <i>k</i> -mers

    Guillaume Marçais, Carl Kingsford

    MaqolaOchiq kirish20117 iqtibos
    ABI

  16. Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm

    Haoyu Cheng, Gregory T. Concepcion, Xiaowen Feng +2

    MaqolaOchiq kirish20217 iqtibos
    ABI

  17. Flavonoids: biosynthesis, biological functions, and biotechnological applications

    Marı́a Lorena Falcone Ferreyra, Sebastián P. Rius, Paula Casati

    MaqolaOchiq kirish20126 iqtibos
    ABI

  18. <tt>edgeR</tt> : a Bioconductor package for differential expression analysis of digital gene expression data

    Mark D. Robinson, Davis J. McCarthy, Gordon K. Smyth

    MaqolaOchiq kirish20096 iqtibos
    ABI

  19. Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

    Brian Haas

    MaqolaOchiq kirish20036 iqtibos
    ABI

  20. MYB transcription factors in Arabidopsis

    Christian Dubos, Ralf Stracke, Erich Grotewold +3

    Sharh maqola20105 iqtibos
    ABI

  21. Fast Genome-Wide Functional Annotation through Orthology Assignment by eggNOG-Mapper

    Jaime Huerta‐Cepas, Kristoffer Forslund, Luís Pedro Coelho +4

    MaqolaOchiq kirish20175 iqtibos
    ABI

  22. A framework for variation discovery and genotyping using next-generation DNA sequencing data

    Mark A. DePristo, Eric Banks, Ryan Poplin +15

    MaqolaOchiq kirish20114 iqtibos
    ABI

  23. Gene duplication and evolution in recurring polyploidization–diploidization cycles in plants

    Xin Qiao, Qionghou Li, Hao Yin +5

    MaqolaOchiq kirish20194 iqtibos
    ABI

  24. HiC-Pro: an optimized and flexible pipeline for Hi-C data processing

    Nicolas Servant, Nelle Varoquaux, Bryan R. Lajoie +6

    MaqolaOchiq kirish20154 iqtibos
    ABI

  25. LTR_retriever: A Highly Accurate and Sensitive Program for Identification of Long Terminal Repeat Retrotransposons

    Shujun Ou, Ning Jiang

    MaqolaOchiq kirish20174 iqtibos
    ABI