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AkademIndex

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63 ta ish

Ish: Whole genome sequencing of Castanea mollissima and molecular mechanisms of sugar and starch synthesis

  1. GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes

    Jian‐Jun Jin, Wen-Bin Yu, Jun-Bo Yang +4

    MaqolaOchiq kirish202048 iqtibos
    ABI

  2. Full-length transcriptome assembly from RNA-Seq data without a reference genome

    Manfred Grabherr, Brian J. Haas, Moran Yassour +18

    MaqolaOchiq kirish201116 iqtibos
    ABI

  3. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

    Michael I. Love, Wolfgang Huber, Simon Anders

    MaqolaOchiq kirish201414 iqtibos
    ABI

  4. BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

    Felipe A. Simão, Robert M. Waterhouse, Panagiotis Ioannidis +2

    MaqolaOchiq kirish201512 iqtibos
    ABI

  5. PAML 4: Phylogenetic Analysis by Maximum Likelihood

    Z. Yang

    MaqolaOchiq kirish200711 iqtibos
    ABI

  6. WGCNA: an R package for weighted correlation network analysis

    Peter Langfelder, Steve Horvath

    MaqolaOchiq kirish200810 iqtibos
    ABI

  7. MCScanX: a toolkit for detection and evolutionary analysis of gene synteny and collinearity

    Yupeng Wang, Haibao Tang, Jeremy D. DeBarry +9

    MaqolaOchiq kirish20129 iqtibos
    ABI

  8. StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

    Mihaela Pertea, Geo Pertea, Corina Antonescu +3

    MaqolaOchiq kirish20158 iqtibos
    ABI

  9. clusterProfiler: an R Package for Comparing Biological Themes Among Gene Clusters

    Guangchuang Yu, Li-Gen Wang, Yanyan Han +1

    MaqolaOchiq kirish20128 iqtibos
    ABI

  10. CD-HIT: accelerated for clustering the next-generation sequencing data

    LiMin Fu, Beifang Niu, Zhengwei Zhu +2

    MaqolaOchiq kirish20127 iqtibos
    ABI

  11. Automated eukaryotic gene structure annotation using EVidenceModeler and the Program to Assemble Spliced Alignments

    Brian J. Haas, Steven L. Salzberg, Wei Zhu +6

    MaqolaOchiq kirish20087 iqtibos
    ABI

  12. tRNAscan-SE: A Program for Improved Detection of Transfer RNA Genes in Genomic Sequence

    Todd M. Lowe, Sean R. Eddy

    MaqolaOchiq kirish19977 iqtibos
    ABI

  13. Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm

    Haoyu Cheng, Gregory T. Concepcion, Xiaowen Feng +2

    MaqolaOchiq kirish20217 iqtibos
    ABI

  14. HISAT: a fast spliced aligner with low memory requirements

    Daehwan Kim, Ben Langmead, Steven L. Salzberg

    Maqola20157 iqtibos
    ABI

  15. DNA sequencing with chain-terminating inhibitors

    Frederick Sanger, S. Nicklen, Alan Coulson

    Maqola19777 iqtibos
    ABI

  16. Minimap2: pairwise alignment for nucleotide sequences

    Heng Li

    MaqolaOchiq kirish20186 iqtibos
    ABI

  17. Improving the Arabidopsis genome annotation using maximal transcript alignment assemblies

    Brian Haas

    MaqolaOchiq kirish20036 iqtibos
    ABI

  18. Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM

    Heng Li

    Preprint20136 iqtibos
    ABI

  19. De novo assembly of the <i>Aedes aegypti</i> genome using Hi-C yields chromosome-length scaffolds

    Olga Dudchenko, Sanjit Singh Batra, Arina D. Omer +8

    Maqola20174 iqtibos
    ABI

  20. WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes

    Pengchuan Sun, Beibei Jiao, Yongzhi Yang +6

    Maqola20224 iqtibos
    ABI

  21. A Draft Sequence of the Rice Genome ( <i>Oryza sativa</i> L. ssp. <i>indica</i> )

    Jun Yu, Songnian Hu, Jun Wang +97

    Maqola20024 iqtibos
    ABI

  22. A Draft Sequence of the Rice Genome ( <i>Oryza sativa</i> L. ssp. <i>japonica</i> )

    Stephen A. Goff, Darrell Ricke, Tien‐Hung Lan +52

    Boshqa20024 iqtibos
    ABI

  23. NextPolish: a fast and efficient genome polishing tool for long-read assembly

    Jiang Hu, Junpeng Fan, Zongyi Sun +1

    Maqola20193 iqtibos
    ABI

  24. Using native and syntenically mapped cDNA alignments to improve <i>de novo</i> gene finding

    Mario Stanke, Mark Diekhans, Robert Baertsch +1

    MaqolaOchiq kirish20083 iqtibos
    ABI

  25. MAKER: An easy-to-use annotation pipeline designed for emerging model organism genomes

    Brandi L. Cantarel, Ian Korf, Sofia Robb +6

    Maqola20073 iqtibos
    ABI